Stem-loop eca-mir-140

Accession

MI0012682

Description

Equus caballus eca-mir-140 precursor miRNA

Literature search

17 open access papers mention eca-mir-140
(29 sentences)

Sequence

1432442 reads, 2140.0 reads per million, 234 experiments

cCAGUGGUUUUACCCUAUGGUAGguuacgucaugcuguucUACCACAGGGUAGAACCACGG
((.(((((((((((((.(((((((.((.((...)))).))))))).)))))))))))))))

Structure

  A             A       u  c  c 
cC GUGGUUUUACCCU UGGUAGg ua gu  
|| ||||||||||||| ||||||| || || a
GG CACCAAGAUGGGA ACCAUcu gu cg  
  -             C       u  -  u 

Annotation confidence High

Genome context

3: 20601709-20601769 [+]

Mature eca-miR-140-5p

• Accession: MIMAT0012926
• Description: Equus caballus eca-miR-140-5p mature miRNA
• Sequence: 2 - CAGUGGUUUUACCCUAUGGUAG - 23
• Evidence: not_experimental

Mature eca-miR-140-3p

• Accession: MIMAT0012927
• Description: Equus caballus eca-miR-140-3p mature miRNA
• Sequence: 41 - UACCACAGGGUAGAACCACGG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131