Stem-loop eca-mir-218-1

Accession

MI0012683

Description

Equus caballus eca-mir-218-1 precursor miRNA

Sequence

219446 reads, 283.0 reads per million, 183 experiments

UUGUGCUUGAUCUAACCAUGUGguugccagguaugaguaAAACAUGGUUCCGUCAAGCACCa
..(((((((((..((((((((..((((((....)).)))).))))))))..)))))))))..

Structure

UU         CU        Gg    -  g 
  GUGCUUGAU  AACCAUGU  uugc ca g
  |||||||||  ||||||||  |||| ||  
  CACGAACUG  UUGGUACA  Aaug gu u
aC         CC        -A    a  a 

Annotation confidence Medium

Genome context

3: 105377070-105377131 [-]

Mature eca-miR-218-5p

• Accession: MIMAT0012928
• Description: Equus caballus eca-miR-218-5p mature miRNA
• Sequence: 1 - UUGUGCUUGAUCUAACCAUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature eca-miR-218-1-3p

• Accession: MIMAT0051405
• Description: Equus caballus eca-miR-218-1-3p mature miRNA
• Sequence: 40 - AAACAUGGUUCCGUCAAGCACC - 61
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131