Stem-loop eca-mir-328

Accession

MI0012684

Description

Equus caballus eca-mir-328 precursor miRNA

Literature search

4 open access papers mention eca-mir-328
(7 sentences)

Sequence

71070 reads, 641.0 reads per million, 210 experiments

ggagcgggggggCAGGAGGGGCUCAGGGAGAAAGugugugcagcccCUGGCCCUCUCUGCCCUUCCGUccc
(((.((((((((((((.(((((.(((((................)))))))))).))))))))))))))).

Structure

-   g            A     U     AGAAAGu 
 gga cgggggggCAGG GGGGC CAGGG       g
 ||| |||||||||||| ||||| |||||        
 ccU GCCUUCCCGUCU UCCCG GUCcc       u
c   -            C     -     cgacgug 

Annotation confidence High

Genome context

3: 18363106-18363176 [-]

Mature eca-miR-328-5p

• Accession: MIMAT0051331
• Description: Equus caballus eca-miR-328-5p mature miRNA
• Sequence: 13 - CAGGAGGGGCUCAGGGAGAAAG - 34
• Evidence: not_experimental

Mature eca-miR-328-3p

• Accession: MIMAT0012929
• Description: Equus caballus eca-miR-328-3p mature miRNA
• Sequence: 47 - CUGGCCCUCUCUGCCCUUCCGU - 68
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131