Stem-loop eca-mir-95

Accession

MI0012686

Description

Equus caballus eca-mir-95 precursor miRNA

Literature search

1 open access papers mention eca-mir-95
(4 sentences)

Sequence

252351 reads, 263.0 reads per million, 146 experiments

aacacagugggcgCUCAAUAAAUGUUUGUUGAAUugagaugcguuaaaUUCAACGGGUCUUUAUUGAGCAaccacucugug
.(((.(((((..((((((((((..(((((((((((...........)))))))))))..))))))))))..))))).))).

Structure

a   c     gc          UG           gaga 
 aca agugg  gCUCAAUAAA  UUUGUUGAAUu    u
 ||| |||||  ||||||||||  |||||||||||    g
 ugu ucacc  CGAGUUAUUU  GGGCAACUUaa    c
g   c     aA          CU           auug 

Annotation confidence High

Genome context

3: 117518899-117518979 [-]

Mature eca-miR-95-5p

• Accession: MIMAT0061138
• Description: Equus caballus eca-miR-95-5p mature miRNA
• Sequence: 14 - CUCAAUAAAUGUUUGUUGAAU - 34
• Evidence: experimental ; Illumina [1]

Mature eca-miR-95-3p

• Accession: MIMAT0012931
• Description: Equus caballus eca-miR-95-3p mature miRNA
• Sequence: 49 - UUCAACGGGUCUUUAUUGAGCA - 70
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131