Stem-loop eca-mir-182

Accession

MI0012691

Description

Equus caballus eca-mir-182 precursor miRNA

Literature search

10 open access papers mention eca-mir-182
(19 sentences)

Sequence

668636 reads, 3787.0 reads per million, 229 experiments

accauuUUUGGCAAUGGUAGAACUCACACUggugagguaaugggauccggUGGUUCUAGACUUGCCAACUAUggu
(((((..(((((((...((((((...((((((..............))))))))))))...)))))))..)))))

Structure

     uU       UGG      UCA      ugaggu 
accau  UUGGCAA   UAGAAC   CACUgg      a
|||||  |||||||   ||||||   ||||||       
uggUA  AACCGUU   AUCUUG   GUggcc      a
     UC       CAG      ---      uagggu 

Annotation confidence High

Genome context

4: 84571173-84571247 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-182

Mature eca-miR-182-5p

• Accession: MIMAT0012937
• Description: Equus caballus eca-miR-182-5p mature miRNA
• Sequence: 7 - UUUGGCAAUGGUAGAACUCACACU - 30
• Evidence: not_experimental

Mature eca-miR-182-3p

• Accession: MIMAT0051334
• Description: Equus caballus eca-miR-182-3p mature miRNA
• Sequence: 51 - UGGUUCUAGACUUGCCAACUAU - 72
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131