Stem-loop eca-mir-183

Accession

MI0012692

Description

Equus caballus eca-mir-183 precursor miRNA

Literature search

8 open access papers mention eca-mir-183
(12 sentences)

Sequence

265940 reads, 1924.0 reads per million, 230 experiments

cugugUAUGGCACUGGUAGAAUUCACUgugaacagucucggucagUGAAUUACCGAAGGGCCAUAAAca
.(((.((((((.((((((..(((((((((((......)))..))))))))))))..)).)))))).)))

Structure

c   g      A  --    GA        --   ac 
 ugu UAUGGC CU  GGUA  AUUCACUg  uga  a
 ||| |||||| ||  ||||  ||||||||  |||   
 acA AUACCG GA  CCAU  UAAGUgac  gcu  g
-   A      G  AG    --        ug   cu 

Annotation confidence High

Genome context

4: 84575894-84575962 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-183

Mature eca-miR-183-5p

• Accession: MIMAT0012938
• Description: Equus caballus eca-miR-183-5p mature miRNA
• Sequence: 6 - UAUGGCACUGGUAGAAUUCACU - 27
• Evidence: not_experimental

Mature eca-miR-183-3p

• Accession: MIMAT0051335
• Description: Equus caballus eca-miR-183-3p mature miRNA
• Sequence: 46 - UGAAUUACCGAAGGGCCAUAAA - 67
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131