Stem-loop eca-mir-196b

Accession

MI0012693

Description

Equus caballus eca-mir-196b precursor miRNA

Gene family

MIPF0000031; mir-196

Literature search

1 open access papers mention eca-mir-196b
(1 sentences)

Sequence

7 reads, 1 reads per million, 1 experiments

acuggucggugauuUAGGUAGUUUCCUGUUGUUGGGauccagcuuucucucgacagcacgacacugccuucauuacuucaguug
(((((..((((((..(((((((.((.(((((((((((..........))))))))))).)).)))))))..)))))))))))..

Structure

--     uc      uU       U  C           ucca 
  acugg  ggugau  AGGUAGU UC UGUUGUUGGGa    g
  |||||  ||||||  ||||||| || |||||||||||     
  ugacu  ucauua  uccguca ag acgacagcucu    c
gu     --      cu       c  c           cuuu 

Annotation confidence Not enough data

Genome context

chr4: 58199179-58199262 [-]

Mature eca-miR-196b

• Accession: MIMAT0012939
• Description: Equus caballus eca-miR-196b mature miRNA
• Sequence: 15 - UAGGUAGUUUCCUGUUGUUGGG - 36
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131