Stem-loop eca-mir-196b-1

Accession

MI0012693

Description

Equus caballus eca-mir-196b-1 precursor miRNA

Literature search

3 open access papers mention eca-mir-196b-1
(3 sentences)

Sequence

97019 reads, 298.0 reads per million, 206 experiments

acuggucggugauuUAGGUAGUUUCCUGUUGUUGGGauccagcuuucucUCGACAGCACGACACUGCCUUCauuacuucaguug
(((((..((((((..(((((((.((.(((((((((((..........))))))))))).)).)))))))..)))))))))))..

Structure

--     uc      uU       U  C           ucca 
  acugg  ggugau  AGGUAGU UC UGUUGUUGGGa    g
  |||||  ||||||  ||||||| || |||||||||||     
  ugacu  ucauua  UCCGUCA AG ACGACAGCUcu    c
gu     --      CU       C  C           cuuu 

Annotation confidence High

Genome context

4: 58381198-58381281 [-]

Mature eca-miR-196b-5p

• Accession: MIMAT0012939
• Description: Equus caballus eca-miR-196b-5p mature miRNA
• Sequence: 15 - UAGGUAGUUUCCUGUUGUUGGG - 36
• Evidence: not_experimental

Mature eca-miR-196b-3p

• Accession: MIMAT0051336
• Description: Equus caballus eca-miR-196b-3p mature miRNA
• Sequence: 50 - UCGACAGCACGACACUGCCUUC - 71
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131