Stem-loop eca-mir-29a

Accession

MI0012694

Description

Equus caballus eca-mir-29a precursor miRNA

Literature search

28 open access papers mention eca-mir-29a
(76 sentences)

Sequence

3426390 reads, 2652.0 reads per million, 232 experiments

gaugACUGAUUUCUUUUGGUGUUCAGAGucaauauaauuuucUAGCACCAUCUGAAAUCGGUUAu
.((((((((((((...(((((((.((((...........)))))))))))...))))))))))))

Structure

g            UUU       C    ucaa 
 augACUGAUUUC   UGGUGUU AGAG    u
 ||||||||||||   ||||||| ||||    a
 uAUUGGCUAAAG   ACCACGA Ucuu    u
-            UCU       -    uuaa 

Annotation confidence High

Genome context

4: 85442662-85442726 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-29a

Mature eca-miR-29a-5p

• Accession: MIMAT0051337
• Description: Equus caballus eca-miR-29a-5p mature miRNA
• Sequence: 5 - ACUGAUUUCUUUUGGUGUUCAGAG - 28
• Evidence: not_experimental

Mature eca-miR-29a-3p

• Accession: MIMAT0012940
• Description: Equus caballus eca-miR-29a-3p mature miRNA
• Sequence: 43 - UAGCACCAUCUGAAAUCGGUUA - 64
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131