Stem-loop eca-mir-29b

Accession

MI0012695

Description

Equus caballus eca-mir-29b precursor miRNA

Literature search

22 open access papers mention eca-mir-29b
(57 sentences)

Sequence

286177 reads, 1583.0 reads per million, 192 experiments

cuucaggaaGCUGGUUUCAUAUGGUGGUUUAGauuuaaauagugauugucUAGCACCAUUUGAAAUCAGUGUUcuuggggg
(((((((((((((((((((.((((((..((((((.............)))))))))))).)))))))))).))))))))).

Structure

-         -          U      GU      uuaaa 
 cuucaggaa GCUGGUUUCA AUGGUG  UUAGau     u
 ||||||||| |||||||||| ||||||  ||||||     a
 gggguucUU UGACUAAAGU UACCAC  GAUcug     g
g         G          U      --      uuagu 

Annotation confidence High

Genome context

4: 85443041-85443121 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-29b

Mature eca-miR-29b-5p

• Accession: MIMAT0051338
• Description: Equus caballus eca-miR-29b-5p mature miRNA
• Sequence: 10 - GCUGGUUUCAUAUGGUGGUUUAG - 32
• Evidence: not_experimental

Mature eca-miR-29b-3p

• Accession: MIMAT0012941
• Description: Equus caballus eca-miR-29b-3p mature miRNA
• Sequence: 51 - UAGCACCAUUUGAAAUCAGUGUU - 73
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131