Stem-loop eca-mir-335

Accession

MI0012696

Description

Equus caballus eca-mir-335 precursor miRNA

Literature search

10 open access papers mention eca-mir-335
(15 sentences)

Sequence

99351 reads, 342.0 reads per million, 196 experiments

gagcgggggUCAAGAGCAAUAACGAAAAAUGUuugucauaaaccgUUUUUCAUUAUUGCUCCUGACCuccucuca
(((.((((((((.(((((((((.((((((((.((......)).)))))))).))))))))).)))))))).))).

Structure

-   c        A         C        U  gu 
 gag gggggUCA GAGCAAUAA GAAAAAUG uu  c
 ||| |||||||| ||||||||| |||||||| ||   
 cuc ccuCCAGU CUCGUUAUU CUUUUUgc aa  a
a   u        C         A        c  au 

Annotation confidence High

Genome context

4: 85156067-85156141 [+]

Mature eca-miR-335-5p

• Accession: MIMAT0012942
• Description: Equus caballus eca-miR-335-5p mature miRNA
• Sequence: 10 - UCAAGAGCAAUAACGAAAAAUGU - 32
• Evidence: not_experimental

Mature eca-miR-335-3p

• Accession: MIMAT0061088
• Description: Equus caballus eca-miR-335-3p mature miRNA
• Sequence: 46 - UUUUUCAUUAUUGCUCCUGACC - 67
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131