Stem-loop eca-mir-489

Accession

MI0012697

Description

Equus caballus eca-mir-489 precursor miRNA

Literature search

4 open access papers mention eca-mir-489
(6 sentences)

Sequence

1311 reads, 11.0 reads per million, 61 experiments

guggcagcuugguggucguauguguggcgccauuuauuugaccccuuuaggaGUGACAUCACAUAUACGGCGGCuaaacugcuac
(((((((.(((((.(((((((((((((.(.(((((...............))))).).))))))))))))).))))).)))))))

Structure

       c     g             c c     auuuga 
guggcag uuggu gucguaugugugg g cauuu      c
||||||| ||||| ||||||||||||| | |||||      c
caucguc aauCG CGGCAUAUACACU C GUGag      c
       a     G             A A     gauuuc 

Annotation confidence Not enough data

Genome context

4: 37175516-37175600 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-489

Mature eca-miR-489-3p

• Accession: MIMAT0012943
• Description: Equus caballus eca-miR-489-3p mature miRNA
• Sequence: 53 - GUGACAUCACAUAUACGGCGGC - 74
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131