Stem-loop eca-mir-671

Accession

MI0012701

Description

Equus caballus eca-mir-671 precursor miRNA

Literature search

3 open access papers mention eca-mir-671
(4 sentences)

Sequence

35110 reads, 159.0 reads per million, 186 experiments

ggccaggaagaggAGGAAGCCCUGGAGGGGCUGGAGgugauggauguuuuccUCCGGUUCUCAGGGCUCCACCUcuuccgggcc
((((.((((((((.(((.((((((..(((((((((((.((.......)).)))))))))))))))))))).)))))))).))))

Structure

    a        A   A      GA           u  ug 
ggcc ggaagagg GGA GCCCUG  GGGGCUGGAGg ga  g
|||| |||||||| ||| ||||||  ||||||||||| ||  a
ccgg ccuucUCC CCU CGGGAC  UCUUGGCCUcc uu  u
    g        A   -      --           u  ug 

Annotation confidence High

Genome context

4: 102950767-102950850 [+]

Mature eca-miR-671-5p

• Accession: MIMAT0012948
• Description: Equus caballus eca-miR-671-5p mature miRNA
• Sequence: 14 - AGGAAGCCCUGGAGGGGCUGGAG - 36
• Evidence: not_experimental

Mature eca-miR-671-3p

• Accession: MIMAT0012949
• Description: Equus caballus eca-miR-671-3p mature miRNA
• Sequence: 53 - UCCGGUUCUCAGGGCUCCACCU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131