Stem-loop eca-mir-135b

Accession

MI0012704

Description

Equus caballus eca-mir-135b precursor miRNA

Literature search

7 open access papers mention eca-mir-135b
(25 sentences)

Sequence

1260 reads, 8.0 reads per million, 86 experiments

gcucugcuguggccUAUGGCUUUUCAUUCCUAUGUGAuugcuguucuaaacucAUGUAGGGCUAAAAGCCAUGGGcuacagugaggggc
((((((((((((((((((((((((...((((((((((..............))))))))))..)))))))))))))))))))..)))))

Structure

     --                   CAU          uugcug 
gcucu  gcuguggccUAUGGCUUUU   UCCUAUGUGA      u
|||||  |||||||||||||||||||   ||||||||||       
cgggg  ugacaucGGGUACCGAAAA   GGGAUGUAcu      u
     ag                   -UC          caaauc 

Annotation confidence High

Genome context

5: 1907506-1907594 [-]

Mature eca-miR-135b-5p

• Accession: MIMAT0012952
• Description: Equus caballus eca-miR-135b-5p mature miRNA
• Sequence: 15 - UAUGGCUUUUCAUUCCUAUGUGA - 37
• Evidence: not_experimental

Mature eca-miR-135b-3p

• Accession: MIMAT0051341
• Description: Equus caballus eca-miR-135b-3p mature miRNA
• Sequence: 54 - AUGUAGGGCUAAAAGCCAUGGG - 75
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131