Stem-loop eca-mir-15b

Accession

MI0012706

Description

Equus caballus eca-mir-15b precursor miRNA

Literature search

8 open access papers mention eca-mir-15b
(18 sentences)

Sequence

118671 reads, 311.0 reads per million, 232 experiments

cugUAGCAGCACAUCAUGGUUUACAuacuacagucaagaugCGAAUCAUUAUUUGCUGCUCUAg
(((.(((((((.((.(((((((.(((.((.......))))).))))))).)).))))))).)))

Structure

   U       C  C       A   a  ac 
cug AGCAGCA AU AUGGUUU CAu cu  a
||| ||||||| || ||||||| ||| ||  g
gAU UCGUCGU UA UACUAAG gua ga  u
   C       U  U       C   -  ac 

Annotation confidence High

Genome context

19: 3408021-3408084 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-15b

Mature eca-miR-15b-5p

• Accession: MIMAT0012954
• Description: Equus caballus eca-miR-15b-5p mature miRNA
• Sequence: 4 - UAGCAGCACAUCAUGGUUUACA - 25
• Evidence: not_experimental

Mature eca-miR-15b-3p

• Accession: MIMAT0061090
• Description: Equus caballus eca-miR-15b-3p mature miRNA
• Sequence: 42 - CGAAUCAUUAUUUGCUGCUCUA - 63
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131