miRBase entry: eca-mir-15b

Stem-loop eca-mir-15b

Accession

MI0012706

Description

Equus caballus eca-mir-15b precursor miRNA

Literature search

2 open access papers mention eca-mir-15b
(12 sentences)

Sequence

354 reads, 54 reads per million, 1 experiments

cugUAGCAGCACAUCAUGGUUUACAuacuacagucaagaugcgaaucauuauuugcugcucuag
(((.(((((((.((.(((((((.(((.((.......))))).))))))).)).))))))).)))

Structure

   U       C  C       A   a  ac 
cug AGCAGCA AU AUGGUUU CAu cu  a
||| ||||||| || ||||||| ||| ||  g
gau ucgucgu ua uacuaag gua ga  u
   c       u  u       c   -  ac

Annotation confidence High

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Genome context

chr5: 15685189-15685252 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-15b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature eca-miR-15b

Accession	MIMAT0012954
Description	Equus caballus eca-miR-15b mature miRNA
Sequence	4 - UAGCAGCACAUCAUGGUUUACA - 25
Evidence	not_experimental

References

PubMed ID: 19406225
In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
"Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
"Genomics (2009) 94:125-131