Stem-loop eca-mir-16-1

Accession

MI0012707

Description

Equus caballus eca-mir-16-1 precursor miRNA

Literature search

4 open access papers mention eca-mir-16-1
(5 sentences)

Sequence

5855382 reads, 6936.0 reads per million, 238 experiments

guuccgcucUAGCAGCACGUAAAUAUUGGCGUagugaaauaaauauuaaacACCAAUAUUAUUGUGCUGCUUUagcguggc
(((.((((..(((((((((..((((((((.((.................)).))))))))..)))))))))..)))).)))

Structure

   c    cU         UA        C  agugaaa 
guu cgcu  AGCAGCACG  AAUAUUGG GU       u
||| ||||  |||||||||  |||||||| ||       a
cgg gcga  UCGUCGUGU  UUAUAACC ca       a
   u    UU         UA        A  aauuaua 

Annotation confidence High

Genome context

19: 3407863-3407943 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-16-1

Mature eca-miR-16-5p

• Accession: MIMAT0012955
• Description: Equus caballus eca-miR-16-5p mature miRNA
• Sequence: 10 - UAGCAGCACGUAAAUAUUGGCGU - 32
• Evidence: not_experimental

Mature eca-miR-16-1-3p

• Accession: MIMAT0051343
• Description: Equus caballus eca-miR-16-1-3p mature miRNA
• Sequence: 52 - ACCAAUAUUAUUGUGCUGCUUU - 73
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131