Stem-loop eca-mir-190b

Accession

MI0012710

Description

Equus caballus eca-mir-190b precursor miRNA

Literature search

1 open access papers mention eca-mir-190b
(1 sentences)

Sequence

19823 reads, 52.0 reads per million, 143 experiments

ugcuucugugUGAUAUGUUUGAUAUUGGGUUGUuuaauuagaaaccaACUAAAUGUCAAACAUAUUCUUacagcaguggg
.(((.(((((.(((((((((((((((.((((((((......))).))))).)))))))))))))))..))))).)))...

Structure

--u   u     -U               G     -   aa 
   gcu cugug  GAUAUGUUUGAUAUU GGUUG Uuu  u
   ||| |||||  ||||||||||||||| ||||| |||   
   uga gacaU  UUAUACAAACUGUAA UCAac aaa  u
ggg   c     UC               A     c   ga 

Annotation confidence High

Genome context

5: 40110320-40110399 [+]

Mature eca-miR-190b-5p

• Accession: MIMAT0012958
• Description: Equus caballus eca-miR-190b-5p mature miRNA
• Sequence: 11 - UGAUAUGUUUGAUAUUGGGUUGU - 33
• Evidence: experimental ; Illumina [1]

Mature eca-miR-190b-3p

• Accession: MIMAT0051346
• Description: Equus caballus eca-miR-190b-3p mature miRNA
• Sequence: 48 - ACUAAAUGUCAAACAUAUUCUU - 69
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131