Stem-loop eca-mir-214

Accession

MI0012714

Description

Equus caballus eca-mir-214 precursor miRNA

Literature search

17 open access papers mention eca-mir-214
(36 sentences)

Sequence

440660 reads, 5542.0 reads per million, 229 experiments

ucUGCCUGUCUACACUUGCUGUGCagaacauccgcucaccuguACAGCAGGCACAGACAGGCAGU
.((((((((((...((((((((((((.............))))))))))))...)))))))))).

Structure

u          ACA            aacau 
 cUGCCUGUCU   CUUGCUGUGCag     c
 ||||||||||   ||||||||||||     c
 GACGGACAGA   GGACGACAuguc     g
U          CAC            cacuc 

Annotation confidence High

Genome context

5: 8117501-8117565 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-214

Mature eca-miR-214-5p

• Accession: MIMAT0061091
• Description: Equus caballus eca-miR-214-5p mature miRNA
• Sequence: 3 - UGCCUGUCUACACUUGCUGUGC - 24
• Evidence: not_experimental

Mature eca-miR-214-3p

• Accession: MIMAT0012963
• Description: Equus caballus eca-miR-214-3p mature miRNA
• Sequence: 44 - ACAGCAGGCACAGACAGGCAGU - 65
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131