Stem-loop eca-mir-29c

Accession

MI0012716

Description

Equus caballus eca-mir-29c precursor miRNA

Literature search

11 open access papers mention eca-mir-29c
(18 sentences)

Sequence

783931 reads, 1077.0 reads per million, 221 experiments

aucucuuacacaggcugACCGAUUUCUCCUGGUGUUCAGAgucuguuuuugucUAGCACCAUUUGAAAUCGGUUAugauguaggggga
..((((((((((...(((((((((((...(((((((.(((...........))))))))))...))))))))))))).))))))))..

Structure

au        -  ggc           UCC       C   gucu 
  cucuuaca ca   ugACCGAUUUC   UGGUGUU AGA    g
  |||||||| ||   |||||||||||   ||||||| |||    u
  ggggaugu gu   AUUGGCUAAAG   ACCACGA Ucu    u
ag        a  ---           UUU       -   guuu 

Annotation confidence High

Genome context

5: 27511696-27511783 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-29c

Mature eca-miR-29c-5p

• Accession: MIMAT0051349
• Description: Equus caballus eca-miR-29c-5p mature miRNA
• Sequence: 18 - ACCGAUUUCUCCUGGUGUUCAGA - 40
• Evidence: not_experimental

Mature eca-miR-29c-3p

• Accession: MIMAT0012964
• Description: Equus caballus eca-miR-29c-3p mature miRNA
• Sequence: 54 - UAGCACCAUUUGAAAUCGGUUA - 75
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131