Stem-loop eca-mir-29c-2

Accession

MI0012717

Description

Equus caballus eca-mir-29c-2 precursor miRNA

Literature search

2 open access papers mention eca-mir-29c-2
(3 sentences)

Sequence

783979 reads, 1080.0 reads per million, 221 experiments

aucucuuacacaggcugACCGAUUUCUCCUGGUGUUCAGAgucuguuuuugucUAGCACCAUUUGAAAUCGGUUAugacguaggggga
..(((((((.((...(((((((((((...(((((((.(((...........))))))))))...)))))))))))))..)))))))..

Structure

au       -a  ggc           UCC       C   gucu 
  cucuuac  ca   ugACCGAUUUC   UGGUGUU AGA    g
  |||||||  ||   |||||||||||   ||||||| |||    u
  ggggaug  gu   AUUGGCUAAAG   ACCACGA Ucu    u
ag       ca  ---           UUU       -   guuu 

Annotation confidence High

Genome context

5: 27608987-27609074 [+]

Mature eca-miR-29c-2-5p

• Accession: MIMAT0051350
• Description: Equus caballus eca-miR-29c-2-5p mature miRNA
• Sequence: 18 - ACCGAUUUCUCCUGGUGUUCAGA - 40
• Evidence: not_experimental

Mature eca-miR-29c-3p

• Accession: MIMAT0012964
• Description: Equus caballus eca-miR-29c-3p mature miRNA
• Sequence: 54 - UAGCACCAUUUGAAAUCGGUUA - 75
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131