Stem-loop eca-mir-488

Accession

MI0012718

Description

Equus caballus eca-mir-488 precursor miRNA

Literature search

1 open access papers mention eca-mir-488
(1 sentences)

Sequence

490 reads, 9.0 reads per million, 73 experiments

gagaaucaucucuCCCAGAUAAUGGCACUCUCAAACaaguuuccaaguuguUUGAAAGGCUAUUUCUUGGUCagaagacucuc
((((.((.(((..((.(((.((((((.((.((((((((.((...)).)))))))).))))))))))).))..))).)).))))

Structure

    a  a   cu  C   U      A  C        g  u 
gaga uc ucu  CC AGA AAUGGC CU UCAAACaa uu  
|||| || |||  || ||| |||||| || |||||||| || c
cucu ag aga  GG UCU UUAUCG GA AGUUuguu aa  
    c  a   CU  U   -      -  A        g  c 

Annotation confidence High

Genome context

5: 12186547-12186629 [-]

Mature eca-miR-488-5p

• Accession: MIMAT0051351
• Description: Equus caballus eca-miR-488-5p mature miRNA
• Sequence: 14 - CCCAGAUAAUGGCACUCUCAAAC - 36
• Evidence: not_experimental

Mature eca-miR-488-3p

• Accession: MIMAT0012965
• Description: Equus caballus eca-miR-488-3p mature miRNA
• Sequence: 52 - UUGAAAGGCUAUUUCUUGGUC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131