Stem-loop eca-mir-9a

Accession

MI0012720

Description

Equus caballus eca-mir-9a precursor miRNA

Literature search

2 open access papers mention eca-mir-9a
(4 sentences)

Sequence

532547 reads, 1821.0 reads per million, 224 experiments

uugguuguuaUCUUUGGUUAUCUAGCUGUAUGAgugguguggagucuucAUAAAGCUAGAUAACCGAAAGUaaaaauaa
...(((.((((.(((((((((((((((.((((((.(.(....).).)))))).))))))))))))))).)))).)))..

Structure

uug   g    C               G      u g g 
   guu uuaU UUUGGUUAUCUAGCU UAUGAg g u u
   ||| |||| ||||||||||||||| |||||| | |  
   uaa aaUG AAGCCAAUAGAUCGA AUAcuu u a g
-aa   a    A               A      c g g 

Annotation confidence High

Genome context

5: 38435547-38435625 [+]

Mature eca-miR-9a-5p

• Accession: MIMAT0012967
• Description: Equus caballus eca-miR-9a-5p mature miRNA
• Sequence: 11 - UCUUUGGUUAUCUAGCUGUAUGA - 33
• Evidence: not_experimental

Mature eca-miR-9a-3p

• Accession: MIMAT0051353
• Description: Equus caballus eca-miR-9a-3p mature miRNA
• Sequence: 50 - AUAAAGCUAGAUAACCGAAAGU - 71
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131