Stem-loop eca-mir-149

Accession

MI0012725

Description

Equus caballus eca-mir-149 precursor miRNA

Literature search

3 open access papers mention eca-mir-149
(5 sentences)

Sequence

68661 reads, 158.0 reads per million, 199 experiments

gccggcgcccaggcUCUGGCUCCGUGUCUUCACUCCCguguguguccgaggaggGAGGGAGGGACGGGGGCUGUGCUGGggcugccgga
.(((((((((.(((.(.(.((((((.(((((.(((((.(.(.......).).)))))))))).)))))).).).))).)))).))))).

Structure

g     -    a   U U G      G     A     g g gu 
 ccggc gccc ggc C G CUCCGU UCUUC CUCCC u u  g
 ||||| |||| ||| | | |||||| ||||| ||||| | |  u
 ggccg cggG UCG G C GGGGCA GGAGG GAGgg g a  c
a     u    G   U U G      G     -     a g gc 

Annotation confidence Medium

Genome context

6: 25920878-25920966 [+]

Mature eca-miR-149-5p

• Accession: MIMAT0012973
• Description: Equus caballus eca-miR-149-5p mature miRNA
• Sequence: 15 - UCUGGCUCCGUGUCUUCACUCCC - 37
• Evidence: not_experimental

Mature eca-miR-149-3p

• Accession: MIMAT0051357
• Description: Equus caballus eca-miR-149-3p mature miRNA
• Sequence: 55 - GAGGGAGGGACGGGGGCUGUGCUGG - 79
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131