Stem-loop eca-mir-615

Accession

MI0012729

Description

Equus caballus eca-mir-615 precursor miRNA

Literature search

3 open access papers mention eca-mir-615
(3 sentences)

Sequence

89944 reads, 869.0 reads per million, 185 experiments

acgcgggaggggcgggagGGGGGUCCCCGGUGCUCGGAUCUcgagggugcuuauuguucggUCCGAGCCUGGGUCUCCCUCUcccccccuccucagc
..((((((((((.((((((((((..(((((.((((((((..((((.(.......).)))))))))))))))))..))))))))))))))))))..))

Structure

ac  --        c          UC     U        CU    g ug 
  gc  gggagggg gggagGGGGG  CCCGG GCUCGGAU  cgag g  c
  ||  |||||||| ||||||||||  ||||| ||||||||  |||| |  u
  cg  uccucccc cccUCUCCCU  GGGUC CGAGCCUg  gcuu u  u
--  ac        -          CU     -        --    g ua 

Annotation confidence High

Genome context

6: 71801138-71801234 [+]

Mature eca-miR-615-5p

• Accession: MIMAT0012976
• Description: Equus caballus eca-miR-615-5p mature miRNA
• Sequence: 19 - GGGGGUCCCCGGUGCUCGGAUCU - 41
• Evidence: not_experimental

Mature eca-miR-615-3p

• Accession: MIMAT0012977
• Description: Equus caballus eca-miR-615-3p mature miRNA
• Sequence: 62 - UCCGAGCCUGGGUCUCCCUCU - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131