Stem-loop eca-let-7a

Accession

MI0012731

Description

Equus caballus eca-let-7a precursor miRNA

Literature search

42 open access papers mention eca-let-7a
(116 sentences)

Sequence

14523846 reads, 30018.0 reads per million, 238 experiments

agguUGAGGUAGUAGGUUGUAUAGUUUagaauuacaucaagggagauaaCUGUACAGCCUCCUAGCUUUCCU
(((..(((.(((.(((((((((((((.........(((......)))))))))))))))).))).))).)))

Structure

   uU   G   U             Uagaauuac   aa 
agg  GAG UAG AGGUUGUAUAGUU         auc  g
|||  ||| ||| |||||||||||||         |||   
UCC  UUC AUC UCCGACAUGUCaa         uag  g
   -U   G   C             ---------   ag 

Annotation confidence High

Genome context

gb|PJAA01002884.1|: 30561-30632 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-let-7a

Mature eca-let-7a-2-5p

• Accession: MIMAT0012979
• Description: Equus caballus eca-let-7a-2-5p mature miRNA
• Sequence: 5 - UGAGGUAGUAGGUUGUAUAGUUU - 27
• Evidence: not_experimental

Mature eca-let-7a-3p

• Accession: MIMAT0051359
• Description: Equus caballus eca-let-7a-3p mature miRNA
• Sequence: 50 - CUGUACAGCCUCCUAGCUUUCCU - 72
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131