Stem-loop eca-mir-100

Accession

MI0012732

Description

Equus caballus eca-mir-100 precursor miRNA

Literature search

10 open access papers mention eca-mir-100
(13 sentences)

Sequence

6548463 reads, 7913.0 reads per million, 205 experiments

AACCCGUAGAUCCGAACUUGUGgugauaguccacaCAAGCUUGUGUCUAUAGGUA
.(((.((((((.(((.((((((.((......)))))))).))).)))))).))).

Structure

A   C      C   A      g  au 
 ACC GUAGAU CGA CUUGUG ug  a
 ||| |||||| ||| |||||| ||   
 UGG UAUCUG GUU GAACac ac  g
A   A      U   C      -  cu 

Annotation confidence High

Genome context

gb|PJAA01002884.1|: 36043-36097 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-100

Mature eca-miR-100-5p

• Accession: MIMAT0012980
• Description: Equus caballus eca-miR-100-5p mature miRNA
• Sequence: 1 - AACCCGUAGAUCCGAACUUGUG - 22
• Evidence: not_experimental

Mature eca-miR-100-3p

• Accession: MIMAT0051360
• Description: Equus caballus eca-miR-100-3p mature miRNA
• Sequence: 36 - CAAGCUUGUGUCUAUAGGUA - 55
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131