Stem-loop eca-mir-125b-1

Accession

MI0012733

Description

Equus caballus eca-mir-125b-1 precursor miRNA

Literature search

22 open access papers mention eca-mir-125b-1
(147 sentences)

Sequence

5298473 reads, 5123.0 reads per million, 229 experiments

ugcgcuccucucaaUCCCUGAGACCCUAACUUGUGAuguuuaccguuuaaauccACGGGUUAGGCUCUUGGGAGCUgcgagucgugcc
.((((..(((.((.((((.((((.(((((((((((..(((((.....))))).))))))))))).))))))))..)).)))..)))).

Structure

u    uc   u  -a    U    C           Au     c 
 gcgc  cuc ca  UCCC GAGA CCUAACUUGUG  guuua c
 ||||  ||| ||  |||| |||| |||||||||||  ||||| g
 cgug  gag gU  AGGG UUCU GGAUUGGGCAc  uaaau u
c    cu   c  CG    -    C           -c     u 

Annotation confidence High

Genome context

7: 30143988-30144075 [-]

Mature eca-miR-125b-5p

• Accession: MIMAT0012981
• Description: Equus caballus eca-miR-125b-5p mature miRNA
• Sequence: 15 - UCCCUGAGACCCUAACUUGUGA - 36
• Evidence: experimental ; Illumina [1]

Mature eca-miR-125b-3p

• Accession: MIMAT0061092
• Description: Equus caballus eca-miR-125b-3p mature miRNA
• Sequence: 55 - ACGGGUUAGGCUCUUGGGAGCU - 76
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131