Stem-loop eca-mir-125b

Accession

MI0012733

Description

Equus caballus eca-mir-125b precursor miRNA

Literature search

1 open access papers mention eca-mir-125b
(2 sentences)

Sequence

15873 reads, 2403 reads per million, 1 experiments

ugcgcuccucucaaUCCCUGAGACCCUAACUUGUGAuguuuaccguuuaaauccacggguuaggcucuugggagcugcgagucgugcc
.((((..(((.((.((((.((((.(((((((((((..(((((.....))))).))))))))))).))))))))..)).)))..)))).

Structure

u    uc   u  -a    U    C           Au     c 
 gcgc  cuc ca  UCCC GAGA CCUAACUUGUG  guuua c
 ||||  ||| ||  |||| |||| |||||||||||  ||||| g
 cgug  gag gu  aggg uucu ggauugggcac  uaaau u
c    cu   c  cg    -    c           -c     u 

Annotation confidence High

Genome context

chr7: 29499965-29500052 [-]

Mature eca-miR-125b-5p

• Accession: MIMAT0012981
• Description: Equus caballus eca-miR-125b-5p mature miRNA
• Sequence: 15 - UCCCUGAGACCCUAACUUGUGA - 36
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131