Stem-loop eca-mir-1302c-5

Accession

MI0012734

Description

Equus caballus eca-mir-1302c-5 precursor miRNA

Literature search

1 open access papers mention eca-mir-1302c-5
(1 sentences)

Sequence

5 reads, 0.0 reads per million, 3 experiments

caguuaaauuugaauuucugggaaacaaugaauaauuuuuuaguguaaguauaucccaugcaauauUUGCGACAUACUUAUACUAAAaauaaugcuuguuuguuugaaauucagauguaacu
.(((((.(((((((((((.((.((((((.(......((((((((((((((((.((....((((...)))))).)))))))))))))))).....))))))).)).))))))))))).)))))

Structure

c     a           u  g      u aauaau                a  ccau    u 
 aguua auuugaauuuc gg aaacaa g      uuuuuaguguaaguau uc    gcaa  
 ||||| ||||||||||| || |||||| |      |||||||||||||||| ||    |||| a
 ucaau uagacuuaaag uu uuuguu c      aaAAAUCAUAUUCAUA AG    CGUU  
-     g           u  g      - -guaau                C  ----    u 

Annotation confidence Not enough data

Genome context

7: 90062343-90062464 [-]

Mature eca-miR-1302c-3p

• Accession: MIMAT0012982
• Description: Equus caballus eca-miR-1302c-3p mature miRNA
• Sequence: 67 - UUGCGACAUACUUAUACUAAA - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131