Stem-loop eca-mir-23a

Accession

MI0012737

Description

Equus caballus eca-mir-23a precursor miRNA

Literature search

17 open access papers mention eca-mir-23a
(89 sentences)

Sequence

1771326 reads, 2508.0 reads per million, 236 experiments

ggccggcuGGGGUUCCUGGGGAUGGGAUUUGcugcuugucacaaAUCACAUUGCCAGGGAUUUCCAAccgacc
((.(((.((((((((((((.((((.((((((.((.....)))))))).)))).))))))).))))).))).))

Structure

  c   c     -       G    G      c  c 
gg cgg uGGGG UUCCUGG GAUG GAUUUG ug u
|| ||| ||||| ||||||| |||| |||||| || u
cc gcc ACCUU AGGGACC UUAC CUAaac ac g
  a   A     U       G    A      -  u 

Annotation confidence High

Genome context

7: 46233009-46233081 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from eca-mir-23a

Mature eca-miR-23a-5p

• Accession: MIMAT0051361
• Description: Equus caballus eca-miR-23a-5p mature miRNA
• Sequence: 9 - GGGGUUCCUGGGGAUGGGAUUUG - 31
• Evidence: not_experimental

Mature eca-miR-23a-3p

• Accession: MIMAT0012986
• Description: Equus caballus eca-miR-23a-3p mature miRNA
• Sequence: 45 - AUCACAUUGCCAGGGAUUUCCAA - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131