Stem-loop eca-mir-34b

Accession

MI0012741

Description

Equus caballus eca-mir-34b precursor miRNA

Literature search

1 open access papers mention eca-mir-34b
(2 sentences)

Sequence

1486 reads, 225 reads per million, 1 experiments

gugcucgguuuguAGGCAGUGUAAUUAGCUGAUUGUacucuggagcuuacAAUCACUAACUCCACUGCCAUCaaaacaaggcac
(((((..((((...(((((((...((((.((((((((..........))))))))))))...)))))))....))))..)))))

Structure

     cg    -guA       UAA    C        cucu 
gugcu  guuu    GGCAGUG   UUAG UGAUUGUa    g
|||||  ||||    |||||||   |||| ||||||||     
cacgg  caaa    CCGUCAC   AAUC ACUAAcau    g
     aa    aCUA       CUC    -        ucga 

Annotation confidence High

Genome context

chr7: 20101138-20101221 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-34b

Mature eca-miR-34b-5p

• Accession: MIMAT0012990
• Description: Equus caballus eca-miR-34b-5p mature miRNA
• Sequence: 14 - AGGCAGUGUAAUUAGCUGAUUGU - 36
• Evidence: not_experimental

Mature eca-miR-34b-3p

• Accession: MIMAT0012991
• Description: Equus caballus eca-miR-34b-3p mature miRNA
• Sequence: 51 - AAUCACUAACUCCACUGCCAUC - 72
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131