Stem-loop eca-mir-34c

Accession

MI0012742

Description

Equus caballus eca-mir-34c precursor miRNA

Literature search

1 open access papers mention eca-mir-34c
(2 sentences)

Sequence

23651 reads, 3580 reads per million, 1 experiments

agucuaguuacuAGGCAGUGUAGUUAGCUGAUUGCuaauaauaccaaucacuaaccacacggccagguaaaaagauu
.((((..(((((.(((.((((.(((((.((((((.((....)).))))))))))).)))).))).)))))..)))).

Structure

a    ag     A   A    A     C      C  a 
 gucu  uuacu GGC GUGU GUUAG UGAUUG ua u
 ||||  ||||| ||| |||| ||||| |||||| ||  
 uaga  aaugg ccg caca caauc acuaac au a
u    aa     a   g    c     -      c  a 

Annotation confidence High

Genome context

chr7: 20101717-20101793 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-34c

Mature eca-miR-34c

• Accession: MIMAT0012992
• Description: Equus caballus eca-miR-34c mature miRNA
• Sequence: 13 - AGGCAGUGUAGUUAGCUGAUUGC - 35
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131