Stem-loop eca-mir-708

Accession

MI0012745

Description

Equus caballus eca-mir-708 precursor miRNA

Literature search

5 open access papers mention eca-mir-708
(17 sentences)

Sequence

87137 reads, 213.0 reads per million, 153 experiments

gguaacugcccucAAGGAGCUUACAAUCUAGCUGGGgguaaaugacuugcacaugaacgCAACUAGACUGUGAGCUUCUAGAgggcaggggcc
(((..((((((((.(((((((((((.(((((.((.(..((..((.....))..))..).)).))))).))))))))))).))))))))..)))

Structure

   aa        A           A     C  G gg  aa  a 
ggu  cugcccuc AGGAGCUUACA UCUAG UG G  ua  ug c
|||  |||||||| ||||||||||| ||||| || |  ||  || u
ccg  gacgggAG UCUUCGAGUGU AGAUC AC c  gu  ac u
   gg        A           C     A  g aa  ac  g 

Annotation confidence High

Genome context

7: 67413073-67413165 [+]

Mature eca-miR-708-5p

• Accession: MIMAT0012993
• Description: Equus caballus eca-miR-708-5p mature miRNA
• Sequence: 14 - AAGGAGCUUACAAUCUAGCUGGG - 36
• Evidence: not_experimental

Mature eca-miR-708-3p

• Accession: MIMAT0061095
• Description: Equus caballus eca-miR-708-3p mature miRNA
• Sequence: 60 - CAACUAGACUGUGAGCUUCUAGA - 82
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131