Stem-loop eca-mir-1-1

Accession

MI0012746

Description

Equus caballus eca-mir-1-1 precursor miRNA

Literature search

7 open access papers mention eca-mir-1-1
(17 sentences)

Sequence

134581680 reads, 77796.0 reads per million, 173 experiments

uacucagaguACAUACUUCUUUAUGUACCCAUaugaacauacaaugcuaUGGAAUGUAAAGAAGUAUGUAUuuuuggu
.(((.(((((((((((((((((((((..(((((..(........)..))))).))))))))))))))))))))).)))

Structure

u   c                     AC     ug aca 
 acu agaguACAUACUUCUUUAUGU  CCAUa  a   u
 ||| |||||||||||||||||||||  |||||  |    
 ugg uuuUAUGUAUGAAGAAAUGUA  GGUau  u   a
-   u                     -A     cg aac 

Annotation confidence High

Genome context

8: 42946236-42946313 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-1-1

Mature eca-miR-1-1-5p

• Accession: MIMAT0051369
• Description: Equus caballus eca-miR-1-1-5p mature miRNA
• Sequence: 11 - ACAUACUUCUUUAUGUACCCAU - 32
• Evidence: not_experimental

Mature eca-miR-1-3p

• Accession: MIMAT0012994
• Description: Equus caballus eca-miR-1-3p mature miRNA
• Sequence: 50 - UGGAAUGUAAAGAAGUAUGUAU - 71
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131