Stem-loop eca-mir-130b

Accession

MI0012748

Description

Equus caballus eca-mir-130b precursor miRNA

Literature search

5 open access papers mention eca-mir-130b
(10 sentences)

Sequence

51131 reads, 620.0 reads per million, 222 experiments

ggccugccugacACUCUUUCCCUGUUGCACUACUgugggcugcuggaagCAGUGCAAUGAUGAAAGGGCAUcggucaggcc
((((((.((((..(((((((..(((((((((.((.(((....)))..)).)))))))))..)))))))..)))).))))))

Structure

      c    cA       CC         A  -g   g 
ggccug cuga  CUCUUUC  UGUUGCACU CU  ugg c
|||||| ||||  |||||||  ||||||||| ||  |||  
ccggac ggcU  GGGAAAG  GUAACGUGA ga  guc u
      u    AC       UA         C  ag   g 

Annotation confidence High

Genome context

8: 5383817-5383897 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-130b

Mature eca-miR-130b-5p

• Accession: MIMAT0051372
• Description: Equus caballus eca-miR-130b-5p mature miRNA
• Sequence: 13 - ACUCUUUCCCUGUUGCACUACU - 34
• Evidence: not_experimental

Mature eca-miR-130b-3p

• Accession: MIMAT0012996
• Description: Equus caballus eca-miR-130b-3p mature miRNA
• Sequence: 50 - CAGUGCAAUGAUGAAAGGGCAU - 71
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131