Stem-loop eca-mir-133a

Accession

MI0012749

Description

Equus caballus eca-mir-133a precursor miRNA

Literature search

21 open access papers mention eca-mir-133a
(144 sentences)

Sequence

116225302 reads, 70369.0 reads per million, 172 experiments

gcuagAGCUGGUAAAAUGGAACCAAAUcgccucuucaauggaUUUGGUCCCCUUCAACCAGCUGuagc
((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))

Structure

    g       AA  U  A        gccuc 
gcua AGCUGGU  AA GG ACCAAAUc     u
|||| |||||||  || || ||||||||      
cgau UCGACCA  UU CC UGGUUUag     u
    G       AC  C  C        guaac 

Annotation confidence High

Genome context

8: 42949628-42949695 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-133a

Mature eca-miR-133a-5p

• Accession: MIMAT0051373
• Description: Equus caballus eca-miR-133a-5p mature miRNA
• Sequence: 6 - AGCUGGUAAAAUGGAACCAAAU - 27
• Evidence: not_experimental

Mature eca-miR-133a-3p

• Accession: MIMAT0012997
• Description: Equus caballus eca-miR-133a-3p mature miRNA
• Sequence: 43 - UUUGGUCCCCUUCAACCAGCUG - 64
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131