Stem-loop eca-mir-30b

Accession

MI0012757

Description

Equus caballus eca-mir-30b precursor miRNA

Literature search

10 open access papers mention eca-mir-30b
(42 sentences)

Sequence

2197291 reads, 2455.0 reads per million, 236 experiments

UGUAAACAUCCUACACUCAGCUguacuacauggauuggCUGGGAGGUGGAUGUUUACU
.((((((((((.((.((((((((..(.....)...))))))))..)))))))))))).

Structure

U          U  -A        -ua u 
 GUAAACAUCC AC  CUCAGCUg   c a
 |||||||||| ||  ||||||||   | c
 CAUUUGUAGG UG  GGGUCggu   g a
U          -  GA        uag u 

Annotation confidence High

Genome context

9: 77314900-77314957 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-30b

Mature eca-miR-30b-5p

• Accession: MIMAT0013005
• Description: Equus caballus eca-miR-30b-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUACACUCAGCU - 22
• Evidence: not_experimental

Mature eca-miR-30b-3p

• Accession: MIMAT0051377
• Description: Equus caballus eca-miR-30b-3p mature miRNA
• Sequence: 39 - CUGGGAGGUGGAUGUUUACU - 58
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131