Stem-loop eca-mir-30d

Accession

MI0012758

Description

Equus caballus eca-mir-30d precursor miRNA

Literature search

4 open access papers mention eca-mir-30d
(7 sentences)

Sequence

34980 reads, 5295 reads per million, 1 experiments

ugugguUGUAAACAUCCCCGACUGGAAGcugugagacauggcuaagcuuucagucagauguuugcugcgac
.((.((.(((((((((...(((((((((((..(........)..))))))))))).))))))))).)).))

Structure

u  g  U         CCC           gu aga 
 gu gu GUAAACAUC   GACUGGAAGcu  g   c
 || || |||||||||   |||||||||||  |    
 ca cg cguuuguag   cugacuuucga  c   a
-  g  u         --a           au ggu 

Annotation confidence High

Genome context

chr9: 75212697-75212767 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-30d

Mature eca-miR-30d

• Accession: MIMAT0013006
• Description: Equus caballus eca-miR-30d mature miRNA
• Sequence: 7 - UGUAAACAUCCCCGACUGGAAG - 28
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131