Stem-loop eca-mir-30d

Accession

MI0012758

Description

Equus caballus eca-mir-30d precursor miRNA

Literature search

13 open access papers mention eca-mir-30d
(24 sentences)

Sequence

14584275 reads, 13600.0 reads per million, 239 experiments

ugugguUGUAAACAUCCCCGACUGGAAGCUgugagacauggcuaagCUUUCAGUCAGAUGUUUGCUGCgac
.((.((.(((((((((...(((((((((((..(........)..))))))))))).))))))))).)).))

Structure

u  g  U         CCC           gu aga 
 gu gu GUAAACAUC   GACUGGAAGCU  g   c
 || || |||||||||   |||||||||||  |    
 ca CG CGUUUGUAG   CUGACUUUCga  c   a
-  g  U         --A           au ggu 

Annotation confidence High

Genome context

9: 77319227-77319297 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-30d

Mature eca-miR-30d-5p

• Accession: MIMAT0013006
• Description: Equus caballus eca-miR-30d-5p mature miRNA
• Sequence: 7 - UGUAAACAUCCCCGACUGGAAGCU - 30
• Evidence: not_experimental

Mature eca-miR-30d-3p

• Accession: MIMAT0061097
• Description: Equus caballus eca-miR-30d-3p mature miRNA
• Sequence: 47 - CUUUCAGUCAGAUGUUUGCUGC - 68
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131