Stem-loop eca-mir-125a

Accession

MI0012760

Description

Equus caballus eca-mir-125a precursor miRNA

Literature search

1 open access papers mention eca-mir-125a
(1 sentences)

Sequence

34124 reads, 5165 reads per million, 1 experiments

cugggUCCCUGAGACCCUUUAACCUGUGAggacauccagggucACAGGUGAGGUUCUUGGGAGCCugg
((((((.(((((((.((((..((((((((((....))....)))))))))))).))))))).))))))

Structure

      C       C    UA        ----  a 
cugggU CCUGAGA CCUU  ACCUGUGA    gg c
|||||| ||||||| ||||  ||||||||    ||  
gguCCG GGGUUCU GGAG  UGGACAcu    cc a
      A       U    --        ggga  u 

Annotation confidence High

Genome context

chr10: 21371573-21371640 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-125a

Mature eca-miR-125a-5p

• Accession: MIMAT0013008
• Description: Equus caballus eca-miR-125a-5p mature miRNA
• Sequence: 6 - UCCCUGAGACCCUUUAACCUGUGA - 29
• Evidence: not_experimental

Mature eca-miR-125a-3p

• Accession: MIMAT0013009
• Description: Equus caballus eca-miR-125a-3p mature miRNA
• Sequence: 44 - ACAGGUGAGGUUCUUGGGAGCC - 65
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131