Stem-loop eca-mir-150

Accession

MI0012762

Description

Equus caballus eca-mir-150 precursor miRNA

Literature search

18 open access papers mention eca-mir-150
(30 sentences)

Sequence

587926 reads, 716.0 reads per million, 222 experiments

cccugUCUCCCAACCCUUGUACCAGUGcugugccucgguccCUGGUACAGGCAUGGGGGGCAggg
((((((((((((..(((.(((((((.((((.....))))..))))))))))..))))))))))))

Structure

            AC   U       -U    u 
cccugUCUCCCA  CCU GUACCAG  Gcug g
||||||||||||  ||| |||||||  |||| c
gggACGGGGGGU  GGA CAUGGUC  uggc c
            AC   -       cc    u 

Annotation confidence High

Genome context

10: 19592431-19592495 [-]

Mature eca-miR-150-5p

• Accession: MIMAT0013011
• Description: Equus caballus eca-miR-150-5p mature miRNA
• Sequence: 6 - UCUCCCAACCCUUGUACCAGUG - 27
• Evidence: not_experimental

Mature eca-miR-150-3p

• Accession: MIMAT0051378
• Description: Equus caballus eca-miR-150-3p mature miRNA
• Sequence: 42 - CUGGUACAGGCAUGGGGGGCA - 62
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131