Stem-loop eca-mir-330

Accession

MI0012763

Description

Equus caballus eca-mir-330 precursor miRNA

Literature search

4 open access papers mention eca-mir-330
(56 sentences)

Sequence

23968 reads, 76.0 reads per million, 186 experiments

UCUCUGGGCCUGUGUCUUAGGCUcuucaaagaucaaccgAGCAAAAGCACACGGCCUGCAGAGA
((((((((((((((.(((..((((..............))))..))))))).))))..))))))

Structure

      --    -    U   AG    uucaaa 
UCUCUG  GGCC UGUG CUU  GCUc      g
||||||  |||| |||| |||  ||||       
AGAGAC  CCGG ACAC GAA  CGAg      a
      GU    C    -   AA    ccaacu 

Annotation confidence High

Genome context

10: 16353450-16353511 [-]

Mature eca-miR-330-5p

• Accession: MIMAT0013012
• Description: Equus caballus eca-miR-330-5p mature miRNA
• Sequence: 1 - UCUCUGGGCCUGUGUCUUAGGCU - 23
• Evidence: not_experimental

Mature eca-miR-330-3p

• Accession: MIMAT0051379
• Description: Equus caballus eca-miR-330-3p mature miRNA
• Sequence: 40 - AGCAAAAGCACACGGCCUGCAGAGA - 64
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131