Stem-loop eca-mir-371

Accession

MI0012764

Description

Equus caballus eca-mir-371 precursor miRNA

Literature search

1 open access papers mention eca-mir-371
(1 sentences)

Sequence

4305 reads, 4174.0 reads per million, 50 experiments

ACUCAAACUGUGGGGGCACUUUcugugcuacguagggaAGUGCCGCCAUUUUUUGAGUGU
(((((((..((((.((((((((((.(((...))))))))))))).))))..)))))))..

Structure

--       CU    G          g   u 
  ACUCAAA  GUGG GGCACUUUcu ugc  
  |||||||  |||| |||||||||| ||| a
  UGAGUUU  UACC CCGUGAaggg aug  
UG       UU    G          -   c 

Annotation confidence High

Genome context

10: 23262827-23262886 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-371

Mature eca-miR-371-5p

• Accession: MIMAT0013013
• Description: Equus caballus eca-miR-371-5p mature miRNA
• Sequence: 1 - ACUCAAACUGUGGGGGCACUUU - 22
• Evidence: not_experimental

Mature eca-miR-371-3p

• Accession: MIMAT0013014
• Description: Equus caballus eca-miR-371-3p mature miRNA
• Sequence: 39 - AGUGCCGCCAUUUUUUGAGUGU - 60
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131