Stem-loop eca-mir-99b

Accession

MI0012767

Description

Equus caballus eca-mir-99b precursor miRNA

Literature search

3 open access papers mention eca-mir-99b
(6 sentences)

Sequence

3339743 reads, 3408.0 reads per million, 239 experiments

ggcaccCACCCGUAGAACCGACCUUGCGgggccuucgccgcacaCAAGCUCGUGUCUGUGGGUCCGUguc
(((((..(((((((((..(((.((((.(.(((....))).)...)))).)))..)))))))))..)))))

Structure

     cC         AC   C    --C g   c 
ggcac  ACCCGUAGA  CGA CUUG   G ggc u
|||||  |||||||||  ||| ||||   | |||  
cugUG  UGGGUGUCU  GCU GAAC   c ccg u
     CC         GU   C    aca g   c 

Annotation confidence High

Genome context

10: 21666034-21666103 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-99b

Mature eca-miR-99b-5p

• Accession: MIMAT0013018
• Description: Equus caballus eca-miR-99b-5p mature miRNA
• Sequence: 7 - CACCCGUAGAACCGACCUUGCG - 28
• Evidence: not_experimental

Mature eca-miR-99b-3p

• Accession: MIMAT0061099
• Description: Equus caballus eca-miR-99b-3p mature miRNA
• Sequence: 45 - CAAGCUCGUGUCUGUGGGUCCGU - 67
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131