Stem-loop eca-mir-10a

Accession

MI0012768

Description

Equus caballus eca-mir-10a precursor miRNA

Literature search

7 open access papers mention eca-mir-10a
(12 sentences)

Sequence

8074833 reads, 13273.0 reads per million, 228 experiments

aagaugucugucuucuguauaUACCCUGUAGAUCCGAAUUUGUGuaaggaauuuuguggucaCAAAUUCGUAUCUAGGGGAAUAuguaguugacauaaacacuccgcuca
.((.(((.((((..((((((((.((((.(((((.((((((((((................)))))))))).))))))))).))))))))..))))...))))).......

Structure

------a  a   --c    uu        A    G     C          uaaggaa 
       ag ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUG       u
       || |||   ||||  |||||||| |||| ||||| ||||||||||        
       uc aca   acag  gauguAUA GGGG AUCUA GCUUAAACac       u
acucgcc  -   aau    uu        A    -     U          ugguguu 

Annotation confidence High

Genome context

11: 24703522-24703631 [-]

Mature eca-miR-10a-5p

• Accession: MIMAT0013019
• Description: Equus caballus eca-miR-10a-5p mature miRNA
• Sequence: 22 - UACCCUGUAGAUCCGAAUUUGUG - 44
• Evidence: not_experimental

Mature eca-miR-10a-3p

• Accession: MIMAT0051380
• Description: Equus caballus eca-miR-10a-3p mature miRNA
• Sequence: 63 - CAAAUUCGUAUCUAGGGGAAUA - 84
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131