Stem-loop eca-mir-132

Accession

MI0012770

Description

Equus caballus eca-mir-132 precursor miRNA

Literature search

19 open access papers mention eca-mir-132
(58 sentences)

Sequence

69286 reads, 364.0 reads per million, 201 experiments

ggacaACCGUGGCUUUCGAUUGUUACUgugggaaccggaggUAACAGUCUACAGCCAUGGUCGccc
((.(.(((((((((...((((((((((.(((...)))..))))))))))...))))))))).))).

Structure

-  a a         UUC          -g   g 
 gg c ACCGUGGCU   GAUUGUUACU  ugg  
 || | |||||||||   ||||||||||  ||| a
 cc G UGGUACCGA   CUGACAAUgg  gcc  
c  - C         CAU          ag   a 

Annotation confidence High

Genome context

11: 45961566-45961631 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-132

Mature eca-miR-132-5p

• Accession: MIMAT0051381
• Description: Equus caballus eca-miR-132-5p mature miRNA
• Sequence: 6 - ACCGUGGCUUUCGAUUGUUACU - 27
• Evidence: not_experimental

Mature eca-miR-132-3p

• Accession: MIMAT0013021
• Description: Equus caballus eca-miR-132-3p mature miRNA
• Sequence: 42 - UAACAGUCUACAGCCAUGGUCG - 63
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131