Stem-loop eca-mir-142

Accession

MI0012771

Description

Equus caballus eca-mir-142 precursor miRNA

Literature search

2 open access papers mention eca-mir-142
(10 sentences)

Sequence

5217 reads, 790 reads per million, 1 experiments

accCAUAAAGUAGAAAGCACUACUaacagcacuggagggUGUAGUGUUUCCUACUUUAUGGAug
..(((((((((((.(((((((((...(..(....)..)..))))))))).)))))))))))...

Structure

-ac           A         Uaa ag a 
   cCAUAAAGUAG AAGCACUAC   c  c c
   ||||||||||| |||||||||   |  |  
   GGUAUUUCAUC UUUGUGAUG   g  g u
guA           C         -Ug ga g 

Annotation confidence High

Genome context

chr11: 32583173-32583236 [-]

Mature eca-miR-142-5p

• Accession: MIMAT0013022
• Description: Equus caballus eca-miR-142-5p mature miRNA
• Sequence: 4 - CAUAAAGUAGAAAGCACUACU - 24
• Evidence: not_experimental

Mature eca-miR-142-3p

• Accession: MIMAT0013023
• Description: Equus caballus eca-miR-142-3p mature miRNA
• Sequence: 40 - UGUAGUGUUUCCUACUUUAUGGA - 62
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131