Stem-loop eca-mir-144

Accession

MI0012772

Description

Equus caballus eca-mir-144 precursor miRNA

Literature search

8 open access papers mention eca-mir-144
(14 sentences)

Sequence

365060 reads, 1265.0 reads per million, 190 experiments

ggcugGGAUAUCAUCAUAUACUGUAAGUUugcgaugagacacUACAGUAUAGAUGAUGUACUAGuc
((((((.((((((((.(((((((((.((((......))))..))))))))))))))))).))))))

Structure

      G        A         -A    gc 
ggcugG AUAUCAUC UAUACUGUA  GUUu  g
|||||| |||||||| |||||||||  ||||   
cuGAUC UGUAGUAG AUAUGACAU  caga  a
      A        -         ca    gu 

Annotation confidence High

Genome context

11: 43072035-43072100 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-144

Mature eca-miR-144-5p

• Accession: MIMAT0061100
• Description: Equus caballus eca-miR-144-5p mature miRNA
• Sequence: 6 - GGAUAUCAUCAUAUACUGUAAGUU - 29
• Evidence: not_experimental

Mature eca-miR-144-3p

• Accession: MIMAT0013024
• Description: Equus caballus eca-miR-144-3p mature miRNA
• Sequence: 43 - UACAGUAUAGAUGAUGUACUAG - 64
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131