Stem-loop eca-mir-195

Accession

MI0012774

Description

Equus caballus eca-mir-195 precursor miRNA

Literature search

7 open access papers mention eca-mir-195
(72 sentences)

Sequence

497930 reads, 623.0 reads per million, 194 experiments

acacccagcuccccuggcucUAGCAGCACAGAAAUAUUGGCAcugggaagagagucugCCAAUAUUGGCUGUGCUGCUCCAggcagggugguga
.((((......(((((.((..((((((((((.((((((((((((........)))..)))))))))..))))))))))..)).))))).)))).

Structure

a    cagcuc     g  cU          -A         --   ggg 
 cacc      cccug cu  AGCAGCACAG  AAUAUUGGC  Acu   a
 ||||      ||||| ||  ||||||||||  |||||||||  |||    
 gugg      gggac gA  UCGUCGUGUC  UUAUAACCg  uga   a
a    -----u     g  CC          GG         uc   gag 

Annotation confidence High

Genome context

11: 50388621-50388714 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-195

Mature eca-miR-195-5p

• Accession: MIMAT0013027
• Description: Equus caballus eca-miR-195-5p mature miRNA
• Sequence: 21 - UAGCAGCACAGAAAUAUUGGCA - 42
• Evidence: experimental ; Illumina [1]

Mature eca-miR-195-3p

• Accession: MIMAT0061101
• Description: Equus caballus eca-miR-195-3p mature miRNA
• Sequence: 59 - CCAAUAUUGGCUGUGCUGCUCCA - 81
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131