Stem-loop eca-mir-196a

Accession

MI0012775

Description

Equus caballus eca-mir-196a precursor miRNA

Literature search

4 open access papers mention eca-mir-196a
(4 sentences)

Sequence

111900 reads, 123.0 reads per million, 151 experiments

gugaguUAGGUAGUUUCAUGUUGUUGGGccuggauuucugaacaCAACGACAUUAAACCACCCGAcucac
(((((((.(((.((((.((((((((((..(.........)..).))))))))).)))).))).)))))))

Structure

       A   A    C         - Gc ugg 
gugaguU GGU GUUU AUGUUGUUG G  c   a
||||||| ||| |||| ||||||||| |  |   u
cacucAG CCA CAAA UACAGCAAC c  g   u
       C   C    U         a aa ucu 

Annotation confidence High

Genome context

11: 24755448-24755517 [-]

Mature eca-miR-196a-5p

• Accession: MIMAT0013028
• Description: Equus caballus eca-miR-196a-5p mature miRNA
• Sequence: 7 - UAGGUAGUUUCAUGUUGUUGGG - 28
• Evidence: not_experimental

Mature eca-miR-196a-3p

• Accession: MIMAT0051382
• Description: Equus caballus eca-miR-196a-3p mature miRNA
• Sequence: 45 - CAACGACAUUAAACCACCCGA - 65
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131