Stem-loop eca-mir-21

Accession

MI0012776

Description

Equus caballus eca-mir-21 precursor miRNA

Literature search

77 open access papers mention eca-mir-21
(424 sentences)

Sequence

50852468 reads, 41336.0 reads per million, 239 experiments

ugucgggUAGCUUAUCAGACUGAUGUUGACUGuugaaucucauggCAACAGCAGUCGAUGGGCUGUCUGaca
((((((((((((((((.(((((.(((((.((((.((...))))))))))).)))))))))))))))))))))

Structure

                A     A     A    u  a 
ugucgggUAGCUUAUC GACUG UGUUG CUGu ga  
|||||||||||||||| ||||| ||||| |||| || u
acaGUCUGUCGGGUAG CUGAC ACAAC ggua cu  
                -     G     -    -  c 

Annotation confidence High

Genome context

11: 34161377-34161448 [+]

Mature eca-miR-21-5p

• Accession: MIMAT0013029
• Description: Equus caballus eca-miR-21-5p mature miRNA
• Sequence: 8 - UAGCUUAUCAGACUGAUGUUGACUG - 32
• Evidence: not_experimental

Mature eca-miR-21-3p

• Accession: MIMAT0061102
• Description: Equus caballus eca-miR-21-3p mature miRNA
• Sequence: 46 - CAACAGCAGUCGAUGGGCUGUCUG - 69
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131