Stem-loop eca-mir-212

Accession

MI0012777

Description

Equus caballus eca-mir-212 precursor miRNA

Literature search

9 open access papers mention eca-mir-212
(37 sentences)

Sequence

6111 reads, 138.0 reads per million, 165 experiments

CCUUGGCUCUAGACUGCUUACUGcccgggccgcccucagUAACAGUCUCCAGUCACGGCC
((.(((((..((((((.((((((...(((...))).))))))))))))..))))).))..

Structure

--  U     CU      C      ccc   c 
  CC UGGCU  AGACUG UUACUG   ggg  
  || |||||  |||||| ||||||   ||| c
  GG ACUGA  UCUGAC AAUgac   ccc  
CC  C     CC      -      --u   g 

Annotation confidence High

Genome context

11: 45961979-45962038 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-212

Mature eca-miR-212-5p

• Accession: MIMAT0051383
• Description: Equus caballus eca-miR-212-5p mature miRNA
• Sequence: 1 - CCUUGGCUCUAGACUGCUUACUG - 23
• Evidence: not_experimental

Mature eca-miR-212-3p

• Accession: MIMAT0013030
• Description: Equus caballus eca-miR-212-3p mature miRNA
• Sequence: 40 - UAACAGUCUCCAGUCACGGCC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131