Stem-loop eca-mir-22

Accession

MI0012778

Description

Equus caballus eca-mir-22 precursor miRNA

Literature search

11 open access papers mention eca-mir-22
(55 sentences)

Sequence

36212265 reads, 28714.0 reads per million, 239 experiments

ggcugagccgcaguAGUUCUUCAGUGGCAAGCUUUAUGuccugacccagcuaAAGCUGCCAGUUGAAGAACUGUUGcccucugcc
(((.(((..((((((((((((((((((((.((((((.((.........))))))))))))).))))))))))))))).))).)))

Structure

   u   cc               -     A      U  ccu 
ggc gag  gcaguAGUUCUUCAG UGGCA GCUUUA Gu   g
||| |||  ||||||||||||||| ||||| |||||| ||   a
ccg cuc  cGUUGUCAAGAAGUU ACCGU CGAAau cg   c
   u   -c               G     -      -  acc 

Annotation confidence High

Genome context

11: 45699954-45700038 [-]

Mature eca-miR-22-5p

• Accession: MIMAT0061103
• Description: Equus caballus eca-miR-22-5p mature miRNA
• Sequence: 15 - AGUUCUUCAGUGGCAAGCUUUAUG - 38
• Evidence: not_experimental

Mature eca-miR-22-3p

• Accession: MIMAT0013031
• Description: Equus caballus eca-miR-22-3p mature miRNA
• Sequence: 53 - AAGCUGCCAGUUGAAGAACUGUUG - 76
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131